8  Further resources

8.1 Code Review

Software Quality Checklist: https://github.com/eurise-network/technical-reference/blob/v0.1/quality/software-checklist.rst

Self-assessment for FAIR research software: https://fairsoftwarechecklist.net/v0.2/

Software Quality Guidelines: https://github.com/CLARIAH/software-quality-guidelines/blob/v1.0/softwareguidelines.pdf

8.2 Reproducible Notebooks

Tutorial: Hello, Quarto: https://quarto.org/docs/get-started/hello/vscode.html

The Ultimate Markdown Cheat Sheet for Technical Writers and Documentation Engineers: https://medium.com/@kevinteaches/the-ultimate-markdown-cheat-sheet-for-technical-writers-541dbb9fd53c

8.3 Version Control

Happy Git and GitHub for the useR: https://happygitwithr.com/

RStudio User Guide Release 2025.05.1: Version control: https://docs.posit.co/ide/user/ide/guide/tools/version-control.html

Version control using RStudio: https://nceas.github.io/oss-lessons/version-control/4-getting-started-with-git-in-RStudio.html

Reproducible research with R, RStudio and GitLab: Version control: https://matthieu-bruneaux.gitlab.io/guide-r-rstudio-git-gitlab/020-intro-version-control.html

Visual Studio IDE: About Git in Visual Studio: https://learn.microsoft.com/en-us/visualstudio/version-control/git-with-visual-studio?view=vs-2022

8.4 Publishing and Archiving

Github Docs: Referencing and citing content: https://docs.github.com/en/repositories/archiving-a-github-repository/referencing-and-citing-content

How To Make Your GitHub Code Citable With Zenodo: https://www.youtube.com/watch?v=1pI4QU-7c98

How to connect Figshare with your GitHub account: https://help.figshare.com/article/how-to-connect-figshare-with-your-github-account

OSF Support: Connect GitHub to a project: https://help.osf.io/article/211-connect-github-to-a-project

Dataverse Uploader Action: https://github.com/marketplace/actions/dataverse-uploader-action

Intro to Zenodo: Advancing Open Science (Esther Plomp): https://www.youtube.com/watch?v=eChOfh8t04k

How to create a CITATION.cff using cffinit: https://www.youtube.com/watch?v=zcgLIT5Qd4M

How to update an existing CITATION.cff file using cffinit: https://www.youtube.com/watch?v=6Ik1onYbO3A

TADA! Simple guidelines to improve code sharing: https://ecoevorxiv.org/repository/view/9806/